PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma32g00920.1
Common NameZOSMA_32G00920, ZOSMA_66G00730
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 186aa    MW: 21068.9 Da    PI: 6.9641
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma32g00920.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.4e-133985455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Zosma32g00920.1 39 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYITELQ 85
                     799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.133584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-2038101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.95E-153889No hitNo description
PfamPF000104.4E-113985IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-193997IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-174190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MDVELLNDDR PAVSTVVTDE RRPRKRGRKP ANGREEPLNH VEAERQRREK LNQRFYALRA  60
VVPNISKMDK ASLLGDAISY ITELQKKLKE MESEKDVQQN SPDVDVQMGN NEVIVHVSTP  120
LETHPVSTVI NVFKETQVDV VDSKFSASNN TVFHTFVVKT QSGSEQMTMG FFFSPLLTMA  180
CERKF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12028RRPRKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781532.17e-73PREDICTED: transcription factor bHLH13-like
RefseqXP_016459177.17e-73PREDICTED: transcription factor bHLH13-like
SwissprotQ9ZPY82e-63AIB_ARATH; Transcription factor ABA-INDUCIBLE bHLH-TYPE
TrEMBLA0A0K9NST21e-135A0A0K9NST2_Z
STRINGSolyc01g096050.2.12e-71(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73852944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.11e-64ABA-inducible BHLH-type transcription factor